+ directory-metadata + whoami saulius + hostname -f varanas.saulius-grazulis.lt + pwd /home/saulius/struct/COD-crude-data/logs/COD-uncanonical-atoms + svn info Path: . Working Copy Root Path: /home/saulius/struct/COD-crude-data URL: svn+ssh://www.crystallography.net/home/coder/svn-repositories/COD-crude-data/logs/COD-uncanonical-atoms Relative URL: ^/logs/COD-uncanonical-atoms Repository Root: svn+ssh://www.crystallography.net/home/coder/svn-repositories/COD-crude-data Repository UUID: f03e6fd5-de02-4a89-aa47-d94ad8425ebd Revision: 5287 Node Kind: directory Schedule: normal Last Changed Author: saulius Last Changed Rev: 5287 Last Changed Date: 2020-01-13 19:35:47 +0200 (Mon, 13 Jan 2020) + df -h . Filesystem Size Used Avail Use% Mounted on /dev/sda2 455G 391G 41G 91% / + type osname osname is /home/saulius/scripts/osname + osname LinuxMint-18.1 + uname -m x86_64 + date Mon Jan 13 20:04:31 EET 2020 + grep -v '\?' COD-uncanonical-atom-counts.lst + perl -MCOD::AtomProperties -ane '$n1 = ucfirst(lc(substr($F[1],0,1))); $n2 = ucfirst(lc(substr($F[1],0,2))); if( $F[1] =~ /^Wat[A-Za-z0-9\(\)]*$/ ) { print "O"} elsif( exists $COD::AtomProperties::atoms{$n2} ) { print $n2 } elsif( exists $COD::AtomProperties::atoms{$n1} ) { print $n1 } else { print "?"; print STDERR "$0: WARNING, atom type for atom \"$F[1]\" is not recognised\n" }; print "\t", $F[1], "\t", $F[0], "\n"' -e: WARNING, atom type for atom "M" is not recognised -e: WARNING, atom type for atom "X" is not recognised -e: WARNING, atom type for atom "T" is not recognised -e: WARNING, atom type for atom "Z" is not recognised